楊耕契 Ken-Chi Yang

Software/Bioinformatics Engineer/Web Developer/Data Analyst

5+ years experience in full-stack, data mining, machine learning, web crawling, and bioinformatics diversified experience in the fields of biomedical, industrial automation, IOT

high willingness to learn new skills and enjoy challenges

good interpersonal skills & highly self-motivated

Taipei，TW
[email protected]

Experience

Bioinformatics Software Engineer, Quark Biosciences Inc., Feb 2016 - Aug 2019

Full-Stack Web Development / RESTful API / Database Design and Maintenance /Bioinformatics Analysis

Bionews (2017): a content management system for biomedical news
miDatabase™ (2017): a powerful literature mining platform for microRNA
miCloud™ (2017): a precision medicine based cloud analysis platform
LIMS™ (2018): laboratory information management system

Software Engineer, CyberTAN Nov 2014 - Feb 2016

Development of 6-Axis Robotic Arm

Servo motor control: Developed C++ based library to control the operation of several motors with kinematics algorithm.
GUI development and System integration: Developed a user-friendly interface with C++ (QT5) to control robotic arms, sensors, etc. and integrated an existing shop floor control system to transfer data.

Development of Auto-scanner

Developed a device for automatic identification of barcodes on the production line and transfer data to the manufacture execution system via TCP socket

Machine Vision Application and AOI Development

OpenCV in C++/Python.
Image Processing/Recognition
Real-Time Object Tracking.
Barcode recognition (1D barcode, data matrix).

Internet of Things Application Development

4-axis air drone and image detection project
Raspberry pi with open source speech recognition

Education

National Yang Ming University, Taiwan, Sep 2011- Jun 2013

Master's degree, Institute of Biomedical Informatics

Thesis - Mirin: identifying microRNA regulatory modules in protein-protein interaction networks.

Tzu Chi University, Taiwan, Sep 2007- Jun 2011

Bachelor's degree, Department of Medical Informatics

Cloud Computing Platform for Machine Learning (Hadoop, SVM)

Skills

Web development

PHP Codeigniter/Laravel ★★★★★ python/Django ★★★★ Node.js/Express ★★★

Mobile APP

Android ★★★★

React Native ★★★

Ionic ★★

Database

Mysql

Mongodb

Biomedicine

Bioinformatics

Systems Biology

Molecular Biology

Cell Biology

Genomics

Tools

Hadoop

Spark

Elasticsearch

Other

OpenCV, AWS, Javascript, Jquery, Bootstrap, Socket, IOT, Apache, nginx,

SVM, Tensorflow, Keras

Publications

Ken-Chi Yang, Jiun-Huang Ju, Shih-Ting Kang, Pok Eric Yang, Yi-Shan Hsieh, Yu-Ting Chen, Chueh-Chen Chuang, and Wei-Ming Chen* (2018). miDatabase™: a powerful literature mining platform for small non-coding microRNA. (Under review).
Ken-Chi Yang, Chia-Lang Hsu, Chen-Ching Lin, Hsueh-Fen Juan, Hsuan-Cheng Huang (2014). Mirin: identifying microRNA regulatory modules in protein–protein interaction networks.